Skip to Search Skip to Navigation Skip to Content

Software Index

Below is a list of software and their category. Click on the software name for more details.

Software

Category

Abaqus

Engineering

ABINIT

Chemistry Simulation

Adobe Creative Suite 2

General Purpose

AutoQuant

Imaging

BEDOPS

Genomics

bedtools

Genomics

BioImageXD

Imaging

BioPerl

Bioinformatics

Biopython

Bioinformatics

Bowtie2

Genomics

BWA

Genomics

CLC Genomics Workbench

Genomics

ClustalW

Bioinformatics

COLUMBUS

Chemistry Simulation

COPASI

Bioinformatics

Cufflinks

Genomics

EMBOSS

Bioinformatics

FASTA

Bioinformatics

FIT

Neurological Simulation

GAMESS

Chemistry Simulation

GATK

Genomics

GENESIS

Neurological Simulation

GeneSpring

Genomics

GenomeStudio

Genomics

Glimmer

Bioinformatics

GROMACS

Bioinformatics

HMMER

Bioinformatics

IGOR Pro

General Purpose

igvtools

Genomics

ImageJ

Imaging

Imaris

Imaging

Inferno

Proteomics

IPA

Proteomics

Julia

General Purpose

MACS

Genomics

MAQ

Genomics

Materials Studio

Engineering

MATLAB

General Purpose

MaxQuant

Proteomics

MEME Systems

Genomics

MrBayes

Bioinformatics

MSQuant

Proteomics

Mugsy

Genomics

NAMD

Chemistry Simulation

NCBI BLAST

Bioinformatics

NEURON

Neurological Simulation

NWChem

Chemistry Simulation

Octopus

Chemistry Simulation

PHYLIP

Bioinformatics

Picard

Genomics

Prodigal

Genomics

R

General Purpose

RStudio

General Purpose

SAM

Genomics

SAMtools

Genomics

SIESTA

Chemistry Simulation

T-Coffee

Bioinformatics

TopHat

Genomics

USEARCH

Genomics

VCFtools

Genomics

VMD

Chemistry Simulation