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Software - Proteomics

Inferno

Inferno can perform various downstream statistical analysis, normalization, data reduction, and hypothesis testing steps on quantitative proteomics data.

Software Homepage: http://code.google.com/p/inferno4proteomics/
Available on: Windows workstation CBIWS10


IPA

IPA (Ingenuity Pathway Analysis) is software that helps researchers model, analyze, and understand the complex biological and chemical systems at the core of life science research. Please contact the staff to access this software as only a limited number of licenses are available for use. Please read the IPA Usage Policy before using IPA.

Software Homepage: http://www.ingenuity.com/products/pathways_analysis.html


MaxQuant

MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets.

Software Homepage: http://maxquant.org/
Available on: Windows workstation CBIWS10


MSQuant

MSQuant is a tool for quantitative proteomics/mass spectrometry and processes spectra and LC runs to find quantitative information about proteins and peptides.

Software Homepage: http://msquant.sourceforge.net/
Available on: Windows workstation CBIWS10