Journal Publications of MARC Trainees

student authors in bold type


Deng Y, Massey LA, Rodriguez Núñez YA, Arman H, Doyle MP, "Catalytic Divergent [3+3]- and [3+2]-Cycloaddition by Discrimination Between Diazo Compounds." Angew Chem Int Ed Engl. 2017 Sep 25; 56(40):12292-12296.
»» PMC5660928

Yu Y, Humeidi R, Alleyn JR, Doyle MP, "Catalytic Allylic Oxidation of Cyclic Enamides and 3,4-Dihydro-2H-Pyrans by TBHP." J Org Chem. 2017 Aug 18; 82(16):8506-8513.
»» PMC5660929

Deng Y, Massey LA, Zavalij PY, Doyle MP, "Catalytic Asymmetric [3+1]-Cycloaddition Reaction of Ylides with Electrophilic Metallo-enolcarbene Intermediates." Angew Chem Int Ed Engl. 2017 Jun 19; 56(26):7479-7483.
»» PMC5660923

Garcia AF, Berzins T, Acosta M, Pirani S, Osman A, "The Anxiety Depression Distress Inventory-27 (ADDI-27): New Evidence of Factor Structure, Item-Level Measurement Invariance, and Validity." J Pers Assess. 2017 May 11:1-12.
»» PMC5681894

Guisbiers G, Lara HH, Mendoza-Cruz R, Naranjo G, Vincent BA, Peralta XG, Nash KL, "Inhibition of Candida albicans biofilm by pure selenium nanoparticles synthesized by pulsed laser ablation in liquids." Nanomedicine. 2017 Apr; 13(3):1095-1103.
»» PMC5660926

Antonio F. Garcia, Melina Acosta, Saifa Pirani, Daniel Edwards, and Augustine Osman, "Factor Structure, Factorial Invariance, and Validity of the Multidimensional Shame-Related Response Inventory-21 (MSRI-21)." J Couns Psychol. 2017 Mar; 64(2):233-246.
»» PMC5459485

Travis Kotzur, Roberto Benavides-Garcia, Jennifer Mecklenburg, Jamila R. Sanchez, Matthew Reilly, and Brian P. Hermann, "Granulocyte colony-stimulating factor (G-CSF) promotes spermatogenic regeneration from surviving spermatogonia after high-dose alkylating chemotherapy." Reprod Biol Endocrinol. 2017; 15: 7.
»» PMC5225630


Francisco J Pedraza, Julio C Avalos, Brian G Yust, Andrew Tsin, and Dhiraj K Sardar, "Effect of surface coating of KYb2F7:Tm3+ on optical properties and biomedical applications." Nanotechnology. 2016 Sep 23; 27(38):385601.
»» PMC4999246

Pramod K. Mishra, Qun Li, Luis E. Munoz, Chris A. Mares, Elizabeth G. Morris, Judy M. Teale, and Astrid E. Cardona, "Reduced Leukocyte Infiltration in Absence of Eosinophils Correlates with Decreased Tissue Damage and Disease Susceptibility in ΔdblGATA Mice during Murine Neurocysticercosis." PLoS Negl Trop Dis. 2016 Jun 22; 10(6):e0004787.
»» PMC4917226


Jacob A. Przyojski, Monica L. Kiewit, Kathlyn L. Fillman, Hadi D. Arman, and Zachary J. Tonzetich, "Homoleptic Transition Metal Complexes of the 7-Azaindolide Ligand Featuring κ1-N1 Coordination." Inorg Chem. 2015 Oct 5; 54(19): 9637-9645.
»» PMC4801036


Kirstie Salinas, Zurab Kereselidze, Frank DeLuna, Xomalin G Peralta, and Fidel Santamaria, "Transient extracellular application of gold nanostars increases hippocampal neuronal activity." J Nanobiotechnology. 2014 Aug 20; 12:31.
»» PMC4422288

Vitaly O. Kheyfets, Rita C. Thornton, Mikala Kowal, and Ender A. Finol, "A Protocol for Measuring Pull-off Stress of Wound-Treatment Polymers." J Biomech Eng. 2014 Jul; 136(7): 0745011–0745015.
»» PMC5101029

Jossina Gonzalez, Isaiah S. Morales, Desiree M. Villarreal, and Brian E. Derrick, "Low-frequency stimulation induces long-term depression and slow onset long-term potentiation at perforant path-dentate gyrus synapses in vivo." J Neurophysiol. 2014 Mar; 111(6):1259-73.
»» PMC3949311


Chelsea M. Hess, Erin A. Riley, Jorge Palos-Chávez, and Philip J. Reid, "Measuring the Spatial Distribution of Dielectric Constants in Polymers through Quasi-Single Molecule Microscopy." J Phys Chem B. 2013 Jun 13; 117(23):7106-12.
»» PMC4091822


Christopher M. Valdez, Clyde F. Phelixa, Mark A. Smith, George Perry, and Fidel Santamaria, "Modeling cholesterol metabolism by gene expression profiling in the hippocampus." Mol Biosyst. 2011 Jun; 7(6):1891-901.
»» PMC4105148

Brian P. Rubin, Koichi Nishijo, Hung-I Harry Chen, Xiaolan Yi, David P. Schuetze, Ranadip Pal, Suresh I. Prajapati, Jinu Abraham, Benjamin R. Arenkiel, Qing-Rong Chen, Sean Davis, Amanda T. McCleish, Mario R. Capecchi, Joel E. Michalek, Lee Ann Zarzabal, Javed Khan, Zhongxin Yu, David M. Parham, Frederic G. Barr, Paul S. Meltzer, Yidong Chen, and Charles Keller, "Evidence for an Unanticipated Relationship Between Undifferentiated Pleomorphic Sarcoma and Embryonal Rhabdomyosarcoma." Cancer Cell. 2011 February 15; 19(2): 177–191.
»» PMC3040414


Suresh I. Prajapati, Carlo O. Martinez, Jinu Abraham, Amanda T. McCleish, Joel E. Michalek, Brian P. Rubin, Paula K. Shireman, Charles Keller, "Crimson Carrier, A Long-Acting Contrast Agent for In Vivo Near-Infrared Imaging of Injured and Diseased Muscle." Muscle Nerve. 2010 August ; 42(2): 245–251.
»» PMC2910161

Chris M. Valdez, Mark A. Smith, George Perry, Clyde F. Phelix, and Fidel Santamaria, "Cholesterol homeostasis markers are localized to mouse hippocampal pyramidal and granule cell layers." Hippocampus 2010 August ; 20(8): 902–905.
»» PMC2889181

L.Y. Chen, D.A. Bastien, and H.E. Espejel, "Determination of equilibrium free-energy from nonequilibrium work measurements." Phys Chem Chem Phys. 2010 July 7; 12(25): 6579–6582.
»» PMC2888695


Rolando Valdez, Eric M. Johnson, John A. Belcher, John F. Fuini III, and Lorenzo Brancaleon, "Porphyrins Affect the Self-Assembly of Tubulin in Solution." Biophys Chem. 2009 Dec; 145(2-3):98-104.
»» PMC2783650

Erick Berdugoa and Edward R. T. Tiekink, "catena-Poly[[bis(O,O'-diisopropyl dithiophosphato-κ² S,S')nickel(II)]-μ-bis(4-pyridylmethylene)diazane-κ²N:N']." Acta Cryst. 2009 Nov 1; 65(Pt 11): m1444–m1445.
»» PMC2971175

Koichi Nishijo, Tohru Hosoyama, Christopher R.R. Bjornson, Beverly S. Schaffer, Suresh I. Prajapati, Ali N. Bahadur, Mark S. Hansen, Mary C. Blandford, Amanda T. McCleish, Brian P. Rubin, Jonathan A. Epstein, Thomas A. Rando, Mario R. Capecchi, and Charles Keller. "Biomarker system for studying muscle, stem cells, and cancer in vivo." FASEB J. 2009 Aug; 23(8): 2681–2690.
»» PMC2717773

Eri Taniguchi, PhD, Min Jung Cho, MD, Benjamin R. Arenkiel, PhD, Mark S. Hansen, Omar J. Rivera, PhD, Amanda T. McCleish, Stephen J. Qualman, MD, Denis C. Guttridge, PhD, Matthew P. Scott, PhD, Mario R. Capecchi, PhD, and Charles Keller, "Bortezomib Reverses a Post-Translational Mechanism of Tumorigenesis for Patched1 Haploinsufficiency in Medulloblastoma." Pediatr Blood Cancer. 2009 Aug; 53(2):136-44.
»» PMC2850215

Jianying Gu, Jennifer Neary, Hong Cai, Audrey Moshfeghian, Stephen A Rodriguez, Timothy G Lilburn and Yufeng Wang, "Genomic and systems evolution in Vibrionaceae species." BMC Genomics. 2009; 10(Suppl 1): S11.
»» PMC2709254

Alberto Muniz, Brandi S. Betts, Arnoldo R. Trevino, Kalyan Buddavarapu, Ricardo Roman, Jian-Xing Ma, and Andrew T.C. Tsin, "Evidence for Two Retinoid Cycles in the Cone-Dominated Chicken Eye." Biochemistry. 2009 Jul 28; 48(29): 6854–6863.
»» PMC2733357

John Belcher, Samuel Sansone, Nicholas F. Fernandez, William E. Haskins, and Lorenzo Brancaleon, "Photo-induced unfolding of β-lactoglobulin mediated by a water soluble porphyrin." J Phys Chem B. 2009 Apr 30; 113(17): 6020–6030.
»» PMC2735475

Koichi Nishijo, Qing-Rong Chen, Lei Zhang, Amanda T. McCleish, Andrea Rodriguez, Min Jung Cho, Suresh I Prajapati, Jonathan A.L. Gelfond, Gary B. Chisholm, Joel E. Michalek, Bruce J. Aronow, Frederic G. Barr, R. Lor Randall, Marc Ladanyi, Stephen J. Qualman, Brian P. Rubin, Robin D. LeGallo, Chiayeng Wang, Javed Khan, and Charles Keller, "Credentialing a Preclinical Mouse Model of Alveolar Rhabdomyosarcoma." Cancer Res. 2009 Apr 1; 69(7):2902-2911.
»» PMC2789740


Shourong Zhu, Karlos X. Moreno, Roxanne M. Jenkins, and Judith A. Walmsley, "Interactions of 1,5-naphthyridine with Pd(en)Cl2 or [Pd(en)(H2O)2] (NO3)2 in aqueous solution." Dalton Trans. 2008 Dec 7; (45): 6401–6408.
»» PMC4084943

E Taniguchi, K Nishijo, AT McCleish, JE Michalek, MH Grayson, AJ Infante, HE Abboud, RD Legallo, SJ Qualman, BP Rubin, and C Keller, "PDGFR-A is a Therapeutic Target in Alveolar Rhabdomyosarcoma." Oncogene. 2008 Nov 20; 27(51): 6550.
»» PMC2813858

Mark A. Penick, Mathew P.D. Mahindaratne, Robert D. Gutierrez, Terrill D. Smith, Edward R.T. Tiekink, and George R. Negrete, "Tandem Friedel−Crafts Annulation to Novel Perylene Analogues." J Org Chem. 2008 Aug 15; 73(16): 6378–6381.
»» PMC4780845

Demetrio Sierra-Mercado, Dario Dieguez Jr., and Edwin J. Barea-Rodriguez, "Brief Novelty Exposure Facilitates Dentate Gyrus LTP in Aged Rats." Hippocampus. 2008; 18(8): 835–843.
»» PMC2910321

Erick Berdugoa and Edward R.T. Tiekinka, "catena-Poly[[[bis(O,O'-diisobutyl dithiophosphato-κ²,S,S')nickel(II)]-μ; -1,2-bis(4-pyridinemethylene)hydrazine-κ²,N:N')] toluene disolvate]." Acta Crystallogr Sect E. 2008 Jul 1; 64(Pt 7): m911.
»» PMC2961896

Nicholas F. Fernandez, Samuel Sansone, Alberto Mazzini and Lorenzo Brancaleon, "Irradiation of the Porphyrin Causes Unfolding of the Protein in the Protoporphyrin IX/β-Lactoglobulin Noncovalent Complex." J Phys Chem B. 2008 Jun 26; 112(25): 7592–7600.
»» PMC3514890

Sandip Kundu, Mathew P.D. Mahindaratne, Maritza Quintero, Ande Bao, and George R. Negrete, "One-pot Lewis acid catalyzed reductive N-heterocyclization approach to antitumor quinazoline precursors." ARKIVOC, 2008, (ii), 33-42.
»» ISSN 1551-7012


E. Berdugo and E.R.T. Tiekink, "Bis(O,O'-diisopropyldithiophosphato-κ²S,S)(1,10-phenanthroline)nickel(II)." Acta Cryst. (2007). E63, m2688.
»» DOI:10.1107/S1600536807048659

Childers BM, Weber GG, Prouty MG, Castaneda MM, Peng F, Klose KE, "Identification of residues critical for the function of the Vibrio cholerae virulence regulator ToxT by scanning alanine mutagenesis." J Mol Biol. 2007 Apr 13; 367(5):1413-30.
»» PMID:17320105

Jianying Gu, Jennifer L. Neary, Audrey Moshfeghian, Hong Cai, Sos S. Agaian, Timothy G. Lilburn, Yufeng Wang, "Lineage Specific Expansion in Vibrio species." BioComp'07: 540-544.

Gu J, Neary JL, Sanchez M, Yu J, Lilburn TG, Wang Y, "Genome evolution and functional divergence in Yersinia." J Exp Zool B Mol Dev Evol. 2007 Jan 15; 308(1):37-49.
»» PMID:16838303

Tian, F., Johnson, E.M., Zamarripa, M., Sansone, S., Brancaleon, L., "Binding of porphyrins to tubulin heterodimers." Biomacromolecules. 2007 Dec; 8 (12):3767-78.
»» PMID:18020394


Andrew Tsin, Nathan Mata, Elia Villazana, and Eileen Vidro, "New developments in the visual cycle: functional role of 11-cis retinyl esters in the retinal pigment epithelium." Hong Kong J Ophthalmol. 2001 Oct; 5(1):25-29.
»» PMC4348694