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Software - Neurological Simulation

FIT

FIT (Fractional Integration Toolbox™) is software from the Dr. Fidel Santamaria Laboratory at UTSA. Click here for the FIT software download page.

Software Homepage: http://www.utsa.edu/SantamariaLab/
Publication Reference: Marinov TM, Ramirez N, and Santamaria F. Fractional Integration Toolbox. Fractional Calculus and Applied Analysis. September (2013) 16:3, pp 670-681. DOI 10.2478/s13540-013-0042-7.


GENESIS

GENESIS is a general purpose simulation platform that was developed to support the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, simulations of large networks, and systems-level models.
Note: users must have a copy of the GENESIS config in their home directory first. .simrc is for all GENESIS users, while .nxsimrc is for GENESIS without xodus, and .minsimrc is for minimal GENESIS without object libraries or xodus.

Software Homepage: http://www.genesis-sim.org/GENESIS/
Available on: Cheetah Cluster
Command: genesis
Location: /share/apps/genesis-2.3


NEURON

NEURON is a simulation environment for modeling individual neurons and networks of neurons.

Software Homepage: http://www.neuron.yale.edu/neuron/
Available on: Cheetah Cluster
Command: nrngui
Location: /usr/local/nrn/