PUBLICATIONS
RCSG ACCOMPLISHMENTS
The Research Computing Support Group (RCSG) at UTSA has been published in a range of materials showcasing their contributions to computational research. These publications highlight innovative methodologies, case studies, and collaborative projects, providing valuable insights and advancements in the field of research computing.
PUBLISHED RESEARCH
Castillo, O., Mancillas, J., Hughes, W., & Brancaleon, L. (2022). Characterization of the interaction of metal-protoporphyrins photosensitizers with β-lactoglobulin. Biophysical Chemistry, 106918. https://doi.org/10.1016/j.bpc.2022.106918
Cheng, K., Chen, I. C., Cheng, C. E., Mutoji, K., Hale, B. J., Hermann, B. P., Geyer, C. B., Oatley, J. M., & McCarrey, J. R. (2020). Unique epigenetic programming distinguishes regenerative spermatogonial stem cells in the developing mouse testis. iScience, 23(10), 101596. https://doi.org/10.1016/j.isci.2020.101596
Fenner, K., Redgate, A., & Brancaleon, L. (2022). A 200 nanoseconds all-atom simulation of the pH-dependent EF loop transition in bovine β-lactoglobulin: The role of the orientation of the E89 side chain. Journal of Biomolecular Structure and Dynamics, 40(1), 549–564. https://doi.org/10.1080/07391102.2020.1817785
Montaño-Priede, J. L., & Large, N. (2022). Photonic band structure calculation of 3D-finite nanostructured supercrystals. Nanoscale Advances, 4(21), 4589–4596. https://doi.org/10.1039/D2NA00538G
Mondal, S., Montaño-Priede, J. L., Nguyen, V. T., Park, S., Choi, J., Doan, V. H. M., Vo, T. M. T., Vo, T. H., Large, N., Kim, C.-S., & Oh, J. (2022). Computational analysis of drug-free silver triangular nanoprism theranostic probe plasmonic behavior for in-situ tumor imaging and photothermal therapy. Journal of Advanced Research, 41, 23–38. https://doi.org/10.1016/j.jare.2022.02.006
Montaño-Priede, J. L., Mlayah, A., & Large, N. (2022). Raman energy density in the context of acoustoplasmonics. Physical Review B, 106(16), 165425. https://doi.org/10.1103/PhysRevB.106.165425
Padilla, L. A., León-Islas, A. A., Funkhouser, J., Armas-Pérez, J. C., & Ramírez-Hernández, A. (2021). Dynamics and phase behavior of two-dimensional size-asymmetric binary mixtures of core-softened colloids. The Journal of Chemical Physics, 155(21), 214901. https://doi.org/10.1063/5.0067449
Park, Y., Li, B., & Li, Y. (2023). Crop yield prediction using Bayesian spatially varying coefficient models with functional predictors. Journal of the American Statistical Association, 118(541), 70–83. https://doi.org/10.1080/01621459.2022.2123333
Rigor, J., Kurouski, D., & Large, N. (2022). Plasmonic heating effects in tip-enhanced Raman spectroscopy (TERS). The Journal of Physical Chemistry C, 126(32), 13986–13993. https://doi.org/10.1021/acs.jpcc.2c03881
Salinas-Soto, C. A., Leon-Islas, J. G., Herrera-Alonso, M., & Ramírez-Hernández, A. (2022). Hydrophobic solute encapsulation by amphiphilic mikto-grafted bottlebrushes: A dissipative particle dynamics study. ACS Applied Polymer Materials, 4(10), 7340–7351. https://doi.org/10.1021/acsapm.2c01132
Seita, Y., Cheng, K., McCarrey, J. R., Yadu, N., Cheeseman, I. H., Bagwell, A., Ross, C. N., Santana Toro, I., Yen, L. H., Vargas, S., Navara, C. S., Hermann, B. P., & Sasaki, K. (2023). Efficient generation of marmoset primordial germ cell-like cells using induced pluripotent stem cells. eLife, 12, e82263. https://doi.org/10.7554/eLife.82263
Suzuki, S., McCarrey, J. R., & Hermann, B. P. (2021). An mTORC1-dependent switch orchestrates the transition between mouse spermatogonial stem cells and clones of progenitor spermatogonia. Cell Reports, 34(7), 108752. https://doi.org/10.1016/j.celrep.2021.108752
Suzuki, S., McCarrey, J. R., & Hermann, B. P. (2021). Differential RA responsiveness among subsets of mouse late progenitor spermatogonia. Reproduction, 161(6), 645–655. https://doi.org/10.1530/REP-21-0031
Salinas-Soto, C. A., Choe, Y., Hur, S.-M., & Ramírez-Hernández, A. (2023). Exploring conformations of comb-like polymers with varying grafting density in dilute solutions. The Journal of Chemical Physics, 159(11), 114901. https://doi.org/10.1063/5.0148986
Salinas-Soto, C. A., Padilla-Gutierrez, C., Herrera-Alonso, M., Ureña-Benavides, E. E., & Ramírez-Hernández, A. (2024). Structure and organization of amphiphilic mikto-grafted molecular brushes at liquid/liquid planar interfaces. Macromolecules. https://doi.org/10.1021/acs.macromol.3c02278
Toujani, C., Padilla, L. A., Alhraki, N., Hur, S.-M., & Ramírez-Hernández, A. (2024). Self-assembly of rod-coil-rod block copolymers in a coil-selective solvent: Coarse-grained simulation results. Soft Matter. https://doi.org/10.1039/D4SM00251B